Scaffold Ga0208546_1000203

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000203
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25781
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021292	Metagenome	219	N
F033771	Metagenome	176	N
F036299	Metagenome	170	N
F045056	Metagenome	153	N
F067661	Metagenome	125	Y
F077449	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100020310	F045056	N/A	MKFTTEIEGDILGVGTDVTKEFSLSQSPDVNAALIRWMQDVIKLTVEGIERVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRGAPFSFRSINPSEKDVADIRKWAIDKGLGIPADEIDAAAYNIAKSIKRRGIKGRPFLNPVLSDAKLDELVSSIAEVVGKEISISMNV
Ga0208546_100020322	F077449	N/A	MSSWVTIKNDLIAFAESHLQLNAVGFGDPLAIGTDNVINLRTTDRDRVIYPLLFVDAQSASMPIGATNLTVSVLVMDRVADLRGVDATISGSVVYRWTDNEDEVLSDTLRIMQDFVAEFTDDPDRDYTITGAVSATRFVEARDDKVAGWQATVVFELPFSRNVCQIPTS
Ga0208546_100020325	F067661	N/A	MPTFRKYAFNDEATFTALPVPQGFAVPLGEIDGAYCVDILWDAEPQADYLPFECWPPPVGVHTFLGWDEQYGKDYTERDDLNNTLNED
Ga0208546_100020329	F036299	N/A	MLPRSTLIFSLLLFACCRKPAEVIRTSAVVHTDRQVVTAGSLTELTLPDLCDSAGIVRRFALRDSTKTSVLSVANSGTGIVIRLRRDTVVERLILRDTTIVERTVVVQPKKRKSRWPILLVGAILGLLASVVLFARLR
Ga0208546_100020332	F021292	N/A	MNHDIITHTPITMDNGNIVKAYIHKLPSGMYAMHADYPFQPNSNSTRTRQIVDALFRSQHRDWFRFIRFQRSSTPLPMPKLNNQ
Ga0208546_10002038	F033771	N/A	MSLLNKITVDQFQRIVSIEANSIYTTSDKKIGVVAVIDNMPIEQVKKMTIAEVNKRYAEINAASKSLSTLAAKQYAKVGGKWYRFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYTAFFLQLSEPLLTIMRKSLTEQERKMTTAKG