NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1000121

Scaffold Ga0208546_1000121


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1000121 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38179
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (82.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002997Metagenome / Metatranscriptome514Y
F006660Metagenome367Y
F014737Metagenome / Metatranscriptome260Y
F022651Metagenome / Metatranscriptome213Y
F026565Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100012114F006660GGAGGMSFQTIVDIQQSMTVNTRRVVGEQVTRGGQVRTAGYLNAVPWVFTITPHAFLYYPQVRDVIQSIDNSDREYAQNITFSSSNLSWFTEYKGGLSGAQAAALTLASVPATNSQTLTIGNLPSVASSTVVFAAGDFLQLGSYVYKVTAAVLRGSGSTVSVGIHRPVIGTPSVGTLTAVGSAVYFPVYAEQCPTYTLNPMTNGAFVQWDGPFVFRENVAP
Ga0208546_100012115F014737GGAGMTTTIAALSSANIRHAEFIRLIVGTTSPTTYTFCNAAGPVTVSGITFSGLGSLLSLGDVQQDIKASSDDLMIALVGIDPANVSLILSADIKGSSVEVWRGFLDTDNQIITSPTTQFFKRYTGIINNVSITEDWNDQLRSRVATCSISCCSMRKVLESRVAGMRTNQKSWQFVYPSDTSMNRVSLISNQFFDFGSPPSGGSVSNGTNGGQWKDTGGLDVNP
Ga0208546_100012118F026565GAGGMAVFNKNTLNQTFGFDNQILAGELVWQQKQYWNITLGTDITGVDITAQIVRRNISNVTDTRNGLTFDIGNYTPTPTPISLNITNRIDATGVFTVVIDDSVWGLIAADPELDINAQDCVAFSGRIKISFPATGTTPAYDSIIFLLFLVRSDGVINV
Ga0208546_10001214F002997N/AMVARFENITVNQLTFGKSDFGEQSTTISKWFITRARVSAVANTVKIADKYRLYNDLTYFTLNYTPNTKEIIDNQNLYSIKWKGFDWRIDSARESDDRMTVLLMCYRQDPTTAV
Ga0208546_10001219F022651N/AMTTIQNNNDLLQYLISQAESRKDWFGFLQQRMTAITLAHEIAKMHADKMTPAQVVQYAIDLNEAIFHKIINMKRQ

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