Scaffold Ga0208546_1000089

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000089
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41115
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (46.27%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F003889	Metagenome	463	Y
F029405	Metagenome / Metatranscriptome	188	Y
F029735	Metagenome	187	Y
F030408	Metagenome	185	Y
F034160	Metagenome / Metatranscriptome	175	Y
F095396	Metagenome	105	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100008916	F103180	N/A	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMPVITPTDTYTLDQCIGTWPGDETDEELLDTLRSTR
Ga0208546_100008917	F001807	N/A	MTTTRCSVLAIEDTFIEGSNVTVTAVVDDMRLLYRATRFDPEEWAPALCTTTIELDPEEQIPLDEDGFCSYLDQLDPHWQLVDTSDYDLDS
Ga0208546_100008919	F001165	N/A	MPDNIRIPDSTDMQRLAAMRLVAQMKESADRNGIGFIGGFVAPDGQKFVMTNLEDEDMQRMLPEELA
Ga0208546_100008925	F029405	N/A	VKDIDFIDEQRNADLLDAMADIAYEQEQAMRESNQSDWDGIEDISSAERNACDHYNERYVINDYR
Ga0208546_100008927	F030408	N/A	MSIHIALVTDASSRYAHVWGEAPSWGKFLNQLEDVGCEVIEEQTEDWEDSTQDEIAEDCLSVHQLLNDTDFIPHD
Ga0208546_100008928	F003687	AGGA	MTPKAVEYLLTQDARLLARRDAPIIDQDLEQQRQAALEIFFQWQDGMREFQDLIPFCMVLQRQVNLNRELLKWEYQHAD
Ga0208546_100008935	F095396	AGG	MNPKNRAERVIAIDAIANEAQKMAESGADALDVQKFTIGARKELAKQRPDVENYFDAAVAAKKAKDKS
Ga0208546_100008937	F034160	GGA	MDMKEGAFTAKAKRKGITSAQLQENVLANPDEYDEKTVKQANLRKTLVGLHKKKKSNK
Ga0208546_100008938	F029735	N/A	MAKDHRLALDRYIDYTKDPFVKKRKLNFDDSFASKASTGAAPWMPSRFEQSDLLRRIQTRKLSLNPSLNFVGDLPEQYEVFANIGRFVRNESYDFNEGRPLTPLRPEEQPGYSPIWMDAYRISPTMNPDKKTTNPMPRVANPDPRGYMMAAAEKRALNETEDNRSVAQLLENKNNTDKTLTKEETNKKGEPIKNPESA
Ga0208546_100008952	F003889	N/A	VGPEYLAIGLSAIISAVTGGSWVANKILNRQTDQIQQAMSYTSSQKRRIDLLEDQINRMPLDYVLKVDFLREIQEMHDNFREINNKLDKLMEKLLSK