Scaffold Ga0208546_1000070

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000070
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46000
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024291	Metagenome / Metatranscriptome	206	Y
F047555	Metagenome	149	Y
F091636	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100007010	F047555	GGAGG	MSLQAHVQAKVQARSQLANGLTTEIADHPLTFFFDVGDCTKVWSDRRTFSAGLDEVDFSAIGIGTVKLLCIKNLSTTSQIALSAGWTGSQFSLFRQDVTAWNFSPIINLGALTLRGYPIREGGAFMLSCPNSAGFATTSGGSILRVGGTTGQNYEIYVMGT
Ga0208546_100007015	F024291	AGGAGG	MAGVSAQGLTFSFGGSNLTVTSVQVNDTQDLIDGSHLGIAPNGRREYVGGFATDREVQIDYISTNILTAGVSGSLSISGPISFSGNATIASSSIGGSVGALVSGSATFRVA
Ga0208546_10000706	F091636	AGGAG	MIHSQNHKVVANVEAAAVGATATATLTIDTLGFDHASVTVLRASNASTVFANVVKVEESDDNSSYSNVTALVGGGVGGFTIPAVTSTALTSVLKFDIDAKAKKRYLKVSYTPGATANVAIVARLGRGEESPVTNADAGVIGRVVG