Scaffold Ga0207927_1001625

Overview

Basic Information

• Taxon OID: 3300025579
• Scaffold ID: Ga0207927_1001625
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9599
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026935	Metagenome / Metatranscriptome	196	Y
F036573	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207927_10016258	F026935	AGGAG	VTEVFIVFPVHCPVCKQEWTSRRTKGEILDALDNHQPIRAYAECHDWHWDLNESERAELSKRARSAG
Ga0207927_10016259	F036573	GAG	MRDTLKIVLTTVRLEDTSAIKSLRLPIQNNGDPAKLLSARQSGFSHAYEEGARMGRFIASNGATVMSFSIAGITRQEAASIAEECERIAVWNMYEIRKAADRALRASCEPLQ