Basic Information | |
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Taxon OID | 3300025578 Open in IMG/M |
Scaffold ID | Ga0208864_1022632 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1843 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F030333 | Metagenome | 185 | Y |
F034448 | Metagenome | 174 | Y |
F040990 | Metagenome | 160 | Y |
F104453 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208864_10226322 | F040990 | GAG | MNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFMARSSRVWLENANGVYQVHPAWHGYRPVNSHEFTIVKLKAKTIKWWHDEQE |
Ga0208864_10226323 | F104453 | GGTGG | MSKNEYYTNTAARLDTIIGGDTEKFVRLKKCKEEWDRLADAVPVGQGFLTFNDYVREYYGIKLGVDSYTGGVQLDYNIIDDKKYTVFLLKFGQ |
Ga0208864_10226324 | F034448 | N/A | MYVNNYTLPRPAESVLDQCQLVVINDPAFRMWAMKKFCREQSLSLVWSELVETSDVSAYFDEAAAFYFIDPADATLFRLKYK |
Ga0208864_10226326 | F030333 | AGGTGG | MAIDRNPKLVIPVKTYTHYTECEPWCLANIGEWNIAWWKDFPDIAMSVALGEGPQPDCYWFEREQNALMFRLRFV |
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