Scaffold Ga0208864_1003868

Overview

Basic Information

• Taxon OID: 3300025578
• Scaffold ID: Ga0208864_1003868
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4893
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033800	Metagenome	176	N
F096647	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208864_100386810	F033800	N/A	MDNTYIALKKILNMMVPQKYPRVSDIKVIDDSYYYVKNYIVYLGVVPNDLELLRSSDIREYVKDVSRYVLKGGEKLRIVFYNPDL
Ga0208864_100386811	F033800	GGGGG	MFGGEYIFTIMDNTYIALKKILNMMVPEKYPMVSDIKVIDDSDEYHNLERYTVYLGVSYNALKNTIHSSDIREYVRDVSRYVLKGNESLKIMFGNTDLSKF
Ga0208864_10038689	F096647	N/A	VIMKRLVWEFLNTKYNGVMIYHQLFNLSDKLMEKFITDRGDGIIEFVRFHSGKDVRTRVNNFLVGDIIRYFDIDRFDVEIYVLEWCRHKSSEVVEM