NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1008150

Scaffold Ga0209304_1008150


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1008150 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4132
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F025069Metagenome / Metatranscriptome203N
F025529Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0209304_10081502F000751N/AMNIYKTNFPTEQEGKDYLLSIGVLVETDKEIVFSKDTAAVVYIGKVVKIPATYDADGNIITPAVFYPGYAIDVMSSLDLDFGAFMVYPIEAAHSFYGYPRNAEVPPTKDLKNV
Ga0209304_10081503F025069N/AMYRILADYITLGVWGMSMANTITSFDIASASSLAQLVLSILGIVYLGVKIVNESLNGQINREGKRLENERANRDLIDDENEKL
Ga0209304_10081506F025529N/AMQGSKEYFLRVKEAEYFDLPQALRERSVVYYNDYELYKDNPSFKALNKAYRDAKKALENWKYDQRHN
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