NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1004336

Scaffold Ga0209304_1004336


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1004336 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6565
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F024348Metagenome / Metatranscriptome206Y
F056899Metagenome / Metatranscriptome137N
F063073Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209304_100433610F024348N/AMILEEYYEELSDDEANLILDIYHVIDALVYNNEPVSLVRLGYELDIKPQELSDYLPTIVTILNKVEEEYAEVRQGYH
Ga0209304_100433611F013231N/AMINQRNYQTCKLIKNRIDLYLYEMSLLFANLGTDSTVEEHQDAYRREKEYIELIAELDPEKADRLRSSY
Ga0209304_100433613F056899N/AMSRNTFVKASISGDYGQDIVMKYLKGKGYEVEEAPKKLFYDWDVKATKGNRVVTIEVKYDSKAYMWAARRGTPEHPNLYIEFRSTTRDCDSGILKSKADFYFYILKTGKKDIAFVFDRVQLLQHLQMANYRVVGNSATGDDNAEGWIPPLHELLVSRYGYKATIDLTEYA
Ga0209304_100433615F063073N/AMNSTAEEKSSTPIHSLILDRRKAFAELIRAYLRFNVTSAKKVEVMPNGSLSINDTIFKVDISDYTGIEGGFGYIFFNPSSGRLVIEKDNVRKIYKVEVDLLD
Ga0209304_10043369F008384AGTAGMPRYDKAIIEQEAIRSAQQGRITEELGKFILQRSIEVAGSAFVTDGNEELKQALIDAAVMRTCEKFLYYYIKNKSAANLVISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEDGESVTKLKRYIKDDYLSEKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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