Scaffold Ga0209304

Basic Information
Taxon OID	3300025577 Open in IMG/M
Scaffold ID	Ga0209304_1001898 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025577 Open in IMG/M

Scaffold ID

Ga0209304_1001898 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11966
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (20.69%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11966

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (20.69%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F013081	Metagenome / Metatranscriptome	274	N
F018086	Metagenome / Metatranscriptome	237	Y
F023607	Metagenome / Metatranscriptome	209	Y
F028771	Metagenome / Metatranscriptome	190	N
F030048	Metagenome / Metatranscriptome	186	N
F062182	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209304_100189813	F018086	N/A	MSAKKPYLLGDVELQLDTIKKLSQYFENILTYNAKRELVPKKGEDGKELKKLKLNFSIFEEGNFGQNVSFTIPQTKEQRENGEKKRYVANGKIYYASDDLQSFVQKSEAKAEKATPVAADDLPF
Ga0209304_100189816	F028771	N/A	MSFLKGNLGESLWLKELSNTHTDIEKAPNKRFYDWDIKANYKGREVTYEVKYDSKGYYYADRYNRPVNIYIEFQNTRKDEDSGIIASKATYYVYILKSLDNVETAYVFNRLQLLSYLKNADVKVKGNSFGGDNNAKGWIPPLSTLEHLILKKIKLK
Ga0209304_100189818	F030048	AGAAG	MLPEELCNNQEKIAYKSCVDSYFSSGDRQDIMEYWIQLFDQKRFCEAKGVEKALELIDIYEELNAKD
Ga0209304_10018982	F023607	N/A	MHIYKLVFDTEQQGKQVLIDNNVWEEVTEEGVTTLRYINGTKGVVNIGKVINPQATTDPEHPIYYPGYAYDVISTDELELEQYRVYPNGTAAHQFYGYKRDDDK
Ga0209304_100189820	F010473	N/A	MNLIRYEIKAGFFKGFLFGVRHYPFDDEDIYEEDIVLYIGIFQIILTLIYEK
Ga0209304_100189824	F013081	AGGA	MDLIKIVKTIEPEYKNTDQCINPLPNEVELMLDNEDYLIEVNLKEDVLKTNFWQGEEKYNASSDEIDFIYNHLEQLLLSKIEETKVYYNEHNYNYQLWN
Ga0209304_10018983	F062182	GGA	MTSKVMTQKEIISEIREEQKTMAEMQFRLAADLSNFFNKQELFNQRISDILENDEKTDKKGLVYEVAEVSKRVDEIELKGKVTAGKIAVTVTILTFIGGMVLKAINIFD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209304_1001898

Overview

Ecosystem & Geography

Associated Families

Sequences