Scaffold Ga0209304_1001096

Overview

Basic Information

• Taxon OID: 3300025577
• Scaffold ID: Ga0209304_1001096
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17093
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007266	Metagenome / Metatranscriptome	354	Y
F074778	Metagenome / Metatranscriptome	119	Y
F103415	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209304_100109613	F074778	AGGAG	MEIFTQNWEWFLLGFMVCEKLVKLSPTDKDDILLDVVWTSIKKVAGK
Ga0209304_100109619	F103415	N/A	MISYNKTFNQNVLDNLRLLIAQEFRNIPIRYDSVYRGNSFFHLTPRRDEIIELRSDGAIREYSILITYNEKERGRYVKNRSLDSRINIVERLKEIIRVNVASIDDFLYFVDSGGNNFLTSDSEELRILKRPILITSTDQFFITSDDKAFTVFPADFSYEWHNARLQSVNYDLERENANYLSSSMEFLCVVEEVYA
Ga0209304_10010968	F007266	N/A	MTKPIGQDSSLNISLPMLFQAVGIIGAMVWGYGELNGRISFLEYQVKINEEHITAIEEDAKTSQNAEIPADIRQNEKIEVLEREVERLRNGQTK