Scaffold Ga0209304_1000714

Overview

Basic Information

• Taxon OID: 3300025577
• Scaffold ID: Ga0209304_1000714
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22368
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012218	Metagenome	282	N
F036687	Metagenome / Metatranscriptome	169	Y
F064404	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209304_100071415	F036687	N/A	LRNTTNYIGLANAQQEYEISFQEIESKYCRNCYGSLVVEKGSLSDTIFGGQWGNVVNYKLIKIKEKEYLNTYYNYGFPMGQTVMVYKIHSIEEHNFLEPIFEKTFELYRETHRNYNDVPTNFIFDRTVDVKIKKGIEFNISLKVSYCPEIEGEQCDVLFEESHIDFYKIN
Ga0209304_100071416	F064404	N/A	MLHFFGYFKVTNHIGISSVGFEKAAIFLRNRDFRVVELFGIKDNEEVNLLYEDEEPLWITKDHHLEISSLLSNNDHTLFTHVKIELADGGDINYSAASLYVKFPDGEDIKSKTIMLLETMGYYAGEKIFDFCSENPDMHLLEFVLGMEPEDITDEFERMKSHTEYINNEGYLED
Ga0209304_10007142	F012218	N/A	MQRNCTCINTMLSNYECKIILNKHRKDKLTNEEVQQIKAFFELIANAQLEAFQKPKQ