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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025577 Open in IMG/M |
| Scaffold ID | Ga0209304_1000376 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30769 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (86.79%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020685 | Metagenome / Metatranscriptome | 222 | N |
| F022639 | Metagenome / Metatranscriptome | 213 | N |
| F025991 | Metagenome / Metatranscriptome | 199 | Y |
| F037203 | Metagenome | 168 | Y |
| F059920 | Metagenome / Metatranscriptome | 133 | N |
| F073289 | Metagenome / Metatranscriptome | 120 | N |
| F088515 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209304_100037615 | F088515 | AGG | MIDQAQHHIDEATRLIKQAIMTDTLLGNDQAQYVAFLDLWGSLYDLDRLIKNWDEDDEAVKRNLLSEEG |
| Ga0209304_100037619 | F037203 | AGG | MQNRFETLQEALDAEKIAHMWDCSPINYNETRTLTYADGSRYGHYISIYRDERGLYERPIHYSRN |
| Ga0209304_100037633 | F022639 | GAGG | MPKRIYEFICGDDHLTEAYIDSELRTTECKVCGQPAIRIVSKPMVKLEGVTGDFPGAAMQWERKRNEKMAQERKSAAE |
| Ga0209304_10003764 | F073289 | AGGTGG | MVKLEIEDYGYCSKTGVCFNPFGIKPEWVQKRAYKIRHGLLIEQTEEALF |
| Ga0209304_100037644 | F059920 | GGA | VKHSVGKQLTAGVANTVFTVPQGYKSEVDMLFISNLDANNKTTTAYWQHAHDINHKIKIIDLYPMASHTFLQFSNGSIVMQQGDSFVIEPEAGATQSCIITFDLRKEPQTVAFDGE |
| Ga0209304_100037651 | F020685 | GAGG | MININMRLGIGFDIEHNDNICHVVGDDEGRFIAAYEGLIIKIPFFSIYIGEFSELDQEVLEIED |
| Ga0209304_10003768 | F025991 | GGGGG | MRCTCCNVILTPFEATIKKVSDNSFLDMCEGCFSYISDEVKVLTREDLRSEVGMDVANYIDLEDKGELYD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |