Scaffold Ga0209304

Basic Information
Taxon OID	3300025577 Open in IMG/M
Scaffold ID	Ga0209304_1000274 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025577 Open in IMG/M

Scaffold ID

Ga0209304_1000274 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37496
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (27.12%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

37496

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (27.12%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052885	Metagenome / Metatranscriptome	142	N
F056904	Metagenome / Metatranscriptome	137	N
F061979	Metagenome / Metatranscriptome	131	N
F067914	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209304_10002743	F067914	N/A	MENYIKIKEAKPNNNEYVLLRTSVHDSKPKKLLYTNDQFIDFEMRPIKVEPDNYWRPVYGTNPITNDRCEIIINKKDIPEGCQKDGYASNEYITTYLNKGNRYMYVHEGKEISTIWTEELDD
Ga0209304_100027446	F056904	N/A	MKKSASPYNYLSIKVDSLFNDEIKSSTLDLKIRTDLRPTHHTRIYGEVIALPRKYRDDVLPDGEVLWSSEGIESFYSIGDKVYFHYNCVLDEGKKINDNTFLIPARRIFLKVQCDNIIMSPGFSLGHKKYNDNVEEIELDGKKTMAEVSAETGIIINMFPKPLPSILVIDHSSEHDKLGVMCHMLDDSNMEIEVEDKIYYLIENRDIIGMYR
Ga0209304_100027450	F061979	N/A	LERIFKKEQFDGMILNPFELTDNELDLQVRSGLLLEALGPEIWVYPNKYRPYLVRYILYLYDKGSELRRYFPDIAERKKVCAELAGFDLTNKTQKDKAEEFYILSHKSSRLAMITFVKYQNNVIYGLYWSNIEHLWKLISDVSKKFTEFSNDKAYLEGQKIKSQMLELAEETLGRIKKHELELFQGDDLAKELTAKTRQGSFPEDVAKLGDVY
Ga0209304_100027456	F052885	N/A	MKNSDYNNYPEWMKKPFTKTVIYTYHDIIKDPDNPGRYIIPASYQFKLRDQIVVTDEDGTNPRPIHIAYSKGANADGSIILGQDLFFSSDNFGRIVLDPKRASDHNKYMFMEYSNMNASNPNRDQSIPAIWKKEDLEVKAKVSRVDRKARKEAMLEALQLSPHMIDVLVSVLGSRSDKDKSEEEKRDMIEDIAEKNPAKFLAAVKSNLSKIIQTIKEAKEIGIIRNDIKKQQFVFMPEEDLILSTKGFDKKKIYELFAKFLLENPKMLKTIESKVLMEKDLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209304_1000274

Overview

Ecosystem & Geography

Associated Families

Sequences