Scaffold Ga0209304_1000104

Overview

Basic Information

• Taxon OID: 3300025577
• Scaffold ID: Ga0209304_1000104
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57857
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (86.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F019910	Metagenome	227	Y
F041144	Metagenome	160	Y
F052872	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209304_100010414	F019393	AGGAGG	VEYKEIQTYLDADSFIEAHKGLWDMLESKYKKIDEETVVIDNTTWKLMKGSMTCIK
Ga0209304_100010418	F019910	AGGAG	MPNKMSRDINTIPTTDRHIVSYQLYVEWNDSPKLVRLNHDMPSHVANAIDEWFGDIETEENV
Ga0209304_100010420	F041144	AGGAG	MIDDAITTVGFALQSYVNTCIHEDTEENKAEREELEEAWAVIKKKLFKENS
Ga0209304_100010423	F052872	AGG	MNKNFVIAFISQDKDIILEPLAKFNGDVMYFKSSHDARDYIEKLYVNSGVDAVEYDDDGLEIIRVQ