Scaffold Ga0209556_1001604

Overview

Basic Information

• Taxon OID: 3300025547
• Scaffold ID: Ga0209556_1001604
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11944
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051054	Metagenome / Metatranscriptome	144	N
F053334	Metagenome	141	Y
F077400	Metagenome / Metatranscriptome	117	Y
F100510	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209556_100160411	F077400	AGTAGG	MSGFGNPNLSNYIYPVQTSEQRNQDPQEDPRVQVSEMLKGPVRGEGESYEDYKIRMKVEYKLTRDYLKGYLLPQGDK
Ga0209556_100160412	F053334	AGGAG	MAKKKKSSFHEEHNYKEYSYEYRGKTITFWAKDDTDAELYKKKVGKV
Ga0209556_10016046	F100510	GAG	MDYPTDFNKKRPGPWDDETFELTEDVFARWDKENEKWYNKYFVRPLQRFIQTIKDFPSEAKWFYQRGSRGWSDRSVWSIDTWLVDNLIPMLERLKNNKMGTPMSMFKKKDGVDKDGNPTDEASVLAEQRWENVLGEIIYGLKCAKTIQNYDYEDKEEVKKLTKSSQRSFELIGKHLFNLW
Ga0209556_10016048	F051054	AGGA	MRTIKLTTFNDLGDCDRQDVNDLISALVRMGYEVWMTDHSVCFNLGNEDVIKDEKNENNS