Scaffold Ga0209225

Basic Information
Taxon OID	3300025546 Open in IMG/M
Scaffold ID	Ga0209225_1013991 Open in IMG/M
Source Dataset Name	Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025546 Open in IMG/M

Scaffold ID

Ga0209225_1013991 Open in IMG/M

Source Dataset Name

Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4392
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4392

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Washburn Spring, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Washburn Spring, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F086364	Metagenome	111	N
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209225_101399110	F100012	AGGAGG	MVMDREKVLQALREAQAEYNIENLDEFTKQAWEEGNILDAEIVAELTERAVEILFDQHFLWVHIIESEDCEEWIPDGWYSFVAVHPKTHQCLTVLEDPVYSWESRASFSARIRSAEDAIDAVTRLAELIEQNLKGRAVE
Ga0209225_10139913	F104114	AGGAGG	MERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWSLSCSVEDIAPGTLAEIVIRTVEALLGLQWRLEWDYDADADDMVLSSGAATYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFGDAAQAVVDLADIIAEKLLVVRSQVLSLKEVQ
Ga0209225_10139918	F086364	GGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPWTVEEAVEALTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILEIEDAVQAVEYFLRLVQQA
Ga0209225_10139919	F069506	GGAGG	MQLEQLPYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWDDPDFPNDIPEIIMRAVEEIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFIHVAGTVVDYEGIVRLVTKLLNQIQSALADA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209225_1013991

Overview

Ecosystem & Geography

Associated Families

Sequences