Scaffold Ga0209225_1000120

Overview

Basic Information

• Taxon OID: 3300025546
• Scaffold ID: Ga0209225_1000120
• Source Dataset Name: Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90281
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (75.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Washburn Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F064214	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209225_100012033	F064214	AGGAGG	MSHKGDLKLLIKSAEDLAYALRDTLDVIADHERRIKHLEERLGFLADVESRVVEKAVVGGRGE
Ga0209225_10001207	F006925	AGGTGG	LAVEVSILENFGREAELRKKWMHMWERLGVRILKMPKWMQEIVLEDINTAIRNRIAIMEMIQNAKRNH