Scaffold Ga0208303_1043947

Overview

Basic Information

• Taxon OID: 3300025543
• Scaffold ID: Ga0208303_1043947
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1117
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F059875	Metagenome	133	Y
F079202	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208303_10439471	F059875	N/A	MKTLVLIFGVITNDGQLELVKVPDIALKNINSCEKAIETHTKWVDNPDFDNNPLPWGFYTYKNKVVMLQYCTENGVYSG
Ga0208303_10439472	F008915	N/A	MGFIVDNEITLDLYEMQSAAHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLKLQVRTQLPKSNNKNSLIIRQKAEQNQFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN
Ga0208303_10439473	F004990	GGA	MYGDPKKKCCACENTADLKEGNKYYCCDHYALYVLGKSISQIEKELNGQD
Ga0208303_10439474	F079202	GAG	MDKIKYFEKIDKDLINNRALNSHEKLIYIICKSFENAPRGCRISHKYLMQRTGIKT