Scaffold Ga0208303_1004818

Overview

Basic Information

• Taxon OID: 3300025543
• Scaffold ID: Ga0208303_1004818
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4687
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022417	Metagenome / Metatranscriptome	214	N
F027815	Metagenome	193	Y
F050395	Metagenome / Metatranscriptome	145	Y
F081225	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208303_100481810	F022417	GGAGG	MAQMPKFLEDYTTVDELINKMNTEYPECRLIAEMIGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDAAPEKSNLDKKIEVLEAEGLVTDISHKAQAVMNSIKDFAMDCTAQDIDKARLYTASALTELGIRKEDVSITNLQAVKDKIQDISNSEKSA
Ga0208303_100481811	F050395	AGGA	MYPLKRKNKFNWAYKFLYWNGDENIVYLYTIETKEGFQVAESAAWGNATFDGCNKMKYIGKNKMEVENGTNA
Ga0208303_10048183	F027815	N/A	VASLDKDFILPDNLITDNPVFIDTSQEFENDCGDACKI
Ga0208303_10048187	F081225	N/A	MMVGFIGTVVSIVGGDMVNANNRRDFKAEEYDLYDVRKARPFWNQVCEANNWQVIKDEEDFAEDYVCKILNNLYVMELQVVGYWHNFDKDYISNLWISASKVDNLKKKAQAKNTRSGLIFLNCVPNRFIGIDIEEIKESYKVNKASGEKSYKIPLQKIYYLYKELLDRNFCDCLENHIDIMEQGNGRIPMAQRNVNLRGKNGICC