Scaffold Ga0208303_1000028

Overview

Basic Information

• Taxon OID: 3300025543
• Scaffold ID: Ga0208303_1000028
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54635
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (75.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003592	Metagenome / Metatranscriptome	478	Y
F019752	Metagenome / Metatranscriptome	228	Y
F038688	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208303_10000281	F038688	N/A	NRLCRKETIVKYDSQCCGVEASGSMTRQPNGYYKGVCSRCLIITEFNERPEQKYLPPEHLLQRRLDDIDDKLDRIEQLVMKFWDAPEFGFDEVQTDTTHSIEK
Ga0208303_100002872	F003592	GAGG	MQFRTSYKNILSLVSALLLLGTTIFINKYDVKQLYREFVGLRLKVQIQEDTIKNLQEQLDYHIELSENLTQELDDHNETRGKENLLLLERLKELEQQVEILSSKQLTSMTNGKVFSDRFEFSDKQVNRVGQYETKGQVLVAWKDDYLATKKVDVTTTGEIVVKPQIKKLDKDKFFSYIDESYVGGITIRGQGDVQKIEPPRNQLSVGPFIGVAYNATTGLTEPIIGIGLNYNLIKLWDWR
Ga0208303_100002877	F019752	GGA	MTEKNKSIYDSGTTKGSAPRISDRKKYEDNWDKIFNKKDKNEKNKNSNR