Scaffold Ga0208249_1000088

Overview

Basic Information

• Taxon OID: 3300025532
• Scaffold ID: Ga0208249_1000088
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA1M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27164
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N
F085342	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208249_100008812	F030376	GAG	MKAITMITLTAMLMASVMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYFKSGSSIVGKDETFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN
Ga0208249_100008818	F002009	GAGG	VTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRCLFTLAQIKKEVTRL
Ga0208249_100008822	F003304	GGAGG	MKQALVTQSFGEDWKKIIDLTRPRMEAYCKRHNTDFILIDKPLTHPSQYSKSAIGNIIATKGYEQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIEADEAKLVELGR
Ga0208249_100008840	F085342	N/A	MDETCAAPSAIEKAKNGRDIFTDKIADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDIQLAGEKSWQAKAWLAERIYNHAIPSARLQVSQDVTHGISGNLAQLLAGIAGRKKEKKAEVIETQTLPLPKMQIPSIATTSTHKSQIEYCIKSETLEPQAFTPKTPKPRHKQMRRRKPRAESLAKYPPTTTP
Ga0208249_10000889	F025460	AGGAG	MAVLDVPELMNMFRQDELQKQAVADAQRKQALEERAMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTISNQNSLDNEEIQAQRDAINERLRKLSADKLKQEIEMAKGDKRTFAMEAGLGLVGAKPRADVLKDIEAESGVYKNKLAELGFNRQAGQMETNVPDYQSEAMPLQATPQATPRVAPETPAQAPAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ