NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207807_1079806

Scaffold Ga0207807_1079806


Overview

Basic Information
Taxon OID3300025523 Open in IMG/M
Scaffold IDGa0207807_1079806 Open in IMG/M
Source Dataset NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)561
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Source Dataset Sampling Location
Location NameJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038929Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0207807_10798061F038929AGGMKRVRIGRKIEKKKNFIPIRSNPTRVKKFKNKCIKILKIKKH
Ga0207807_10798062F038929N/ARVRTGRKIEKKKNFIPIRLNPTRVKKFKNKCKKILKIKKHYPSFILRLNGLGQAKK

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