Scaffold Ga0208413_1031575

Overview

Basic Information

• Taxon OID: 3300025513
• Scaffold ID: Ga0208413_1031575
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1790
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013135	Metagenome	274	Y
F073440	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208413_10315751	F013135	AGAAGG	MADVQLSEEALRFLEEAEKSIKKIEPVNSGLITNPDENDFNFWNKAGRLTLSAGQGVVNAVEESGDFIDENIVSLGGLAFGDGDGKTELKDFIPKYVTPKKWKEGAYSQQRNLPVFHKPEGLAENLTEGAARFVTGFVGPSKILKGVGLGGTIIKTGLRGMTAGAVADLTVFDPNEGRLSDMLVEFDSPVLNNAVT
Ga0208413_10315752	F073440	N/A	ISEEESINNWKNTFTPLIKQKTSSIKNRRIKKLVEQSIDLENSESIYHLKQNSFKAYEKESVKVYNEDVNAELVKFKTETNPRLKNQYRNNLYIKSELFNEEHMLGSDDLKKRKEAIDSVLLLTDTDSFIGTPDAVNKIKELDKSVNGVKFLSDENFNNSIYNSYVQKIESIAVKGDPNSDYEEAERLLNELENTERYTGSKTISGKREKAFATLKQKILTESIGHDTFVRKIEQGNKFYTYQTEQKKLLEGTFFNAFDASFNKGVNKERASEAGLEYESRIDLYVQSNPDATYNEQQQYARDLRLNLVDKYDDVTTEQITAFNLTENKFNVVRETASVFEWYSEYKKNPSLKDAEGKPIRNTLVSLAKLNGYVDEDGKVQVNKFFNDYVEILKSRQEG