NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208848_1006063

Scaffold Ga0208848_1006063


Overview

Basic Information
Taxon OID3300025509 Open in IMG/M
Scaffold IDGa0208848_1006063 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2450
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → unclassified Starkeya → Starkeya sp. ORNL1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021514Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0208848_10060632F021514GGAMPQNLYLRRQQMVEFSIIDARNNEARMKIEAMLWIVVLILVALSFLFPKTRSFSLSAIGVAIVAIVAIVVVAKRGEPPTLGATAPAAVEKKPIDFERFLVEKLDKADPEAKNRIRMEEIRFDQVRAEAGAERGSIGTVVARLYNDSATYTLTDYGYYLVVQDCIRAVCTTVFDQHGLSAVSVPPNQARDVKIAVRDGSTRDVPPIKILGTANILLTPAATRAGPASSASTD

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