Scaffold Ga0208148_1048082

Overview

Basic Information

• Taxon OID: 3300025508
• Scaffold ID: Ga0208148_1048082
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1066
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F019662	Metagenome	228	Y
F031532	Metagenome	182	N
F085566	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208148_10480821	F085566	AGGAG	MIPYEIGKQLIDKIEKELGGKANGHEDYLEGKGTQFSFDLNGKSYSVDLWDEDII
Ga0208148_10480822	F031532	AGGAG	MSSRITKKKVKTFLTLRFRKEPMMMYDDTLDVAVEVIQDFLNCDPMDIGKLQSNTYNTIYNIEKEIDDTIXNRKTIDR
Ga0208148_10480823	F019662	AGGAG	MTDQEKKDFEWASSFYLYDDLDGDWVNWDEEKLHSEIEKLAWQPFEYWEGKNIYNEIEKLADSVRKYIKENNE
Ga0208148_10480824	F001086	AGGAGG	MADKCTGWAIVATMERPDGTWYTDTITEIDDDTASAVDTFLTEYCEDKEKSKHDXPRKERLXMG