Scaffold Ga0208148_1006112

Overview

Basic Information

• Taxon OID: 3300025508
• Scaffold ID: Ga0208148_1006112
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3896
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F017285	Metagenome	241	Y
F019158	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208148_10061122	F017285	AGGAG	MSWSGTVTCSHCYQRGHNKRKCPSLTEEIKGKYDGNSRMAVKEREAGNENDAQWYDDRAEMYRQQYLKRTKIDLATGEKVTNKAAKAARMKKVTCGYCKERGHTRRTCQHAKRDKQIFVEETRRMRIAALESARSTGIGLGSMIPIRSTGYDTDGEWRRDILTLRYVQSVLWDECHANRTNLIVKHVDARKLGAPNQSPYTSRDQLTKLIQANGAALRYAEAEGQDLPVSSLVPTLDPPKGWLQPTEQSLKVAIKQAFPTKGNDYAKSRNYEYSYPSGITKEIIKDLGLTEHYIT
Ga0208148_10061127	F004771	GAGG	MKRIKKGDLVRMHTHDTGLVGIVIDRHPKAISTTPAQVGIMWTGGSGKIDWEPEGWLEVVSESR
Ga0208148_10061128	F019158	N/A	MKMTIVIDSEDTQGIDAALKIARLMHVKYVGTAAAHKESFGKIEFIKMLRKFMKESVAHMQDEEDNQVKDIGDMHNLRNAKRFADRIFRGER