Scaffold Ga0208356_1000016

Overview

Basic Information

• Taxon OID: 3300025504
• Scaffold ID: Ga0208356_1000016
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83988
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (66.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004821	Metagenome / Metatranscriptome	422	Y
F005789	Metagenome / Metatranscriptome	390	Y
F032367	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208356_100001617	F004821	AGG	MSKRIQNTTFVSRGRITGLVRDESPAGTGQNRTSRSANRDSVPSAADEALFYRARLILGDALPRPNR
Ga0208356_100001628	F005789	GGAGG	MASVIALDASPMNVLCSMRGSVVDARLAYPDVLHVEIRDSQGDLWRLATQDADWSPADPAQLIGRTVEDADIDEETGELRCKLSDGSLLDVKPAAREADDDPPNWELSTPGGVVLEFGPGVRWQISSADAPVSSRH
Ga0208356_100001629	F032367	AGG	LTRKRDIKQFRQACKEIGLTARERYEASEALHAEKASGGAREHMTYGELLAWLRQWRG