NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209012_1007215

Scaffold Ga0209012_1007215


Overview

Basic Information
Taxon OID3300025503 Open in IMG/M
Scaffold IDGa0209012_1007215 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6174
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F011233Metagenome / Metatranscriptome293N
F027904Metagenome / Metatranscriptome193N
F067921Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209012_10072151F067921GGGGGLSETFSRIEDRILRNGQYLLVSYLGSQHPEVSSYTGFRVTKHNFTTLYYNFATEVPNFLPMAPFGGQASSTNSPPYITNFKFSLQQVQNVTDMFDLGKNYDAYQVFYGISPSYLRTMLQIQQQFIAVLEQNINPSPSFVEMGIDGFQSPLFAPDPRTEFIVFLNFTYNMTLMNMATIPILPAFNFVINRMILEPLGREELKKAILAGFPVRSLGAVDSSIMISHKNYPGLVTLSYRDIYG
Ga0209012_10072152F027904GGTGGMEKYNPPEYDLFNLNNGSTLVGSTAVTLLYEGQTNAVVVVPPDLTLRVKQVIIQNTTGSVATVQLQAVTTQSGLPSPVNKTPPIPVPANSAVTLDEEEWSISVKTGYSLAAIDSGMTTGGSGSSNVFVKAYFVKGTGSPI
Ga0209012_10072154F011233N/ALPFVKGWRYHVPKLQQELLSGLSVPFTSEYTILNGQFPGYFVSVAIGTTDPNFITRVSADGLTVIEVTAGDLRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESTKEFFESITPSVVVPPAVPSQPRFVAEGVVSAKLPVKVT
Ga0209012_10072155F006070AGGMTLYPYLVVDLPITDTNTHTYRTDPFNPLALTQPGISLIRLGESVPPVRAFNVYVYNFANAALNVQVIANENAKNYQYGYLLDGLDYQSESGYPDFNIGSAVGVPAGSLSTPSVQAIQSDFYTGAAERYLSVALTYSTAPTSGFVRAHIDLFYEGF

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