NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209012_1006245

Scaffold Ga0209012_1006245


Overview

Basic Information
Taxon OID3300025503 Open in IMG/M
Scaffold IDGa0209012_1006245 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7012
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049100Metagenome / Metatranscriptome147Y
F084461Metagenome / Metatranscriptome112N
F101504Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209012_100624513F049100GAGMVIRKLSMSEIENLKENLNHGGRKSKYDQYLNDLEIGEWLEIDNVNRGVISRASKRLNKKFSVHYINGKYYIERIE
Ga0209012_10062452F084461AGGMSLDLGTLLKNNKATLQSEGGKIVLRISFDDLVQAMYNGLPEQSKKVVSITHDGKQVIISFDASILSGMVGIVAR
Ga0209012_10062459F101504N/AVSQASLKQIATELNNFDGILFVDDIGAINTEYMRVTTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPSVFDEIVNNTSFEANIMDKSYRYYNMRIPDNKPFQHIKIKELQHIKDKFENMKVDTDSQRVEALANNFMTFNSVARRYKIVNNFVKLTAILNEHKIATSEDYQFVAKMLLNNIIESELLERKGFSSRFKFNVFLFNVMLMSKYYGNIFHYSKLKTYLNVTRQTIYNYAKANNIKIDNGYIIYDNERILKVLRNVI

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