Scaffold Ga0209012_1006010

Overview

Basic Information

• Taxon OID: 3300025503
• Scaffold ID: Ga0209012_1006010
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7234
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F027904	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209012_10060102	F027904	GGGGG	VEHKYEPPDYDLFNLNNGSTTIGTTAVTLLYEGQPNATVFAPSDLKLRVKQLIIQNTMSSPITVQLLAVAAPNTNLPSPIPKTPPIPVNANSAVTLSEDEWSISIKAGYGLAVVSSAASSANVFAKCYFTKGTGSPL
Ga0209012_10060104	F011233	GGAGG	VAVPWFLPFVKGWRYHVPKLQRELLSGLPVPFTSEYTIINGQFPGYFVSAAVGTTDPNFITRASVDGLTVIEVTVGDLRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSVVVPPAVPSQPRFVAEEVVSAKLPVKVT
Ga0209012_10060105	F006070	AGG	VTLYPYLVVDLPITDTNTHTYRTDPFNPLALTQPGISLVRLGESVPPVRAFNVYVYNFANTALNVQLIANENAKNYQYGALLDGLDYQSESSYPDFNVGSAVAVPAGSLSTPSIQVIQSDFYTGAAERYLSVALTYSTAPSAGFVRVHIDLFYEGF