Scaffold Ga0209012_1005247

Overview

Basic Information

• Taxon OID: 3300025503
• Scaffold ID: Ga0209012_1005247
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8134
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065947	Metagenome	127	Y
F084462	Metagenome	112	N
F099550	Metagenome / Metatranscriptome	103	Y
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209012_100524712	F099550	N/A	LNSESIFTVMFATNGIVSIALLPKRGQRGGAMYRLTEEIKKLLASKHKNMQIVWVPLPILDEIAQIAEKLHLALNQTIIVLVIHALRGPQPQPISNEVHFLCPLCLQSFTSPEDFLAHLRGDEDVEVKPHI
Ga0209012_100524713	F065947	AGG	MLKSNHIFSLAKIRGALKRSKADKLPCVAYGTGNLSRRIGRGYFFYDYDTKTEEEVQRFRKYVQHTLYVAYVLFRTKHGVMVMSTLTFPFEQLRKYYDQFQREFPSDYLWDIPLFLRLSEKWDWRTGAVVSPMPQIIDNPKQLDIYKLIREDMYPKKWYRTRD
Ga0209012_10052472	F084462	GGAG	MSSKPNEKKTVEVLSVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPATNLTAQQIADYVKKDYAKRKGIVGMQVEV
Ga0209012_10052479	F101506	AGCAGG	MSEDIVARTKISGIEQRIHSLEVQISEIRATQLRQLERQNYVLALLAISLITTIVNLIVLLVK