NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209012_1005247

Scaffold Ga0209012_1005247


Overview

Basic Information
Taxon OID3300025503 Open in IMG/M
Scaffold IDGa0209012_1005247 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8134
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065947Metagenome127Y
F084462Metagenome112N
F099550Metagenome / Metatranscriptome103Y
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209012_100524712F099550N/ALNSESIFTVMFATNGIVSIALLPKRGQRGGAMYRLTEEIKKLLASKHKNMQIVWVPLPILDEIAQIAEKLHLALNQTIIVLVIHALRGPQPQPISNEVHFLCPLCLQSFTSPEDFLAHLRGDEDVEVKPHI
Ga0209012_100524713F065947AGGMLKSNHIFSLAKIRGALKRSKADKLPCVAYGTGNLSRRIGRGYFFYDYDTKTEEEVQRFRKYVQHTLYVAYVLFRTKHGVMVMSTLTFPFEQLRKYYDQFQREFPSDYLWDIPLFLRLSEKWDWRTGAVVSPMPQIIDNPKQLDIYKLIREDMYPKKWYRTRD
Ga0209012_10052472F084462GGAGMSSKPNEKKTVEVLSVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPATNLTAQQIADYVKKDYAKRKGIVGMQVEV
Ga0209012_10052479F101506AGCAGGMSEDIVARTKISGIEQRIHSLEVQISEIRATQLRQLERQNYVLALLAISLITTIVNLIVLLVK

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