Scaffold Ga0209012

Basic Information
Taxon OID	3300025503 Open in IMG/M
Scaffold ID	Ga0209012_1003983 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209012_1003983 Open in IMG/M

Source Dataset Name

Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10459
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (80.95%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10459

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (80.95%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F065947	Metagenome	127	Y
F084462	Metagenome	112	N
F099550	Metagenome / Metatranscriptome	103	Y
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209012_100398312	F101506	AGGA	MSEDIVARTKISGIEQRIHSLEEQISEMRTTQLRQLERQNYVLALLAISLITTIVNLVVLLMK
Ga0209012_100398318	F099550	AGAAG	MYLTDEIKKLLATKHKNMQIVWVPLPVLDEIAQIAEQLHLALNQTIIVLAIHALRGAQPQPNNGTAHFLCPICLQSFTSPENFLTHLKGDEDVKIKPHV
Ga0209012_100398319	F065947	AGG	MLKSNHMFNLDKIRSVLKRNKRIELPCVAYGTGNLSRRIGRGYFFYDYDTSDEKEVERFRKYVQHTFYVAYVLYRTKHGVMVMSTLTFSFEQLRKYYDQFQAEFPSDYLWDIPLFLRLSEKWNWQTGQVVSAMPAIIDNPRQVDIYKLIREDMYPKKWYRTSD
Ga0209012_10039834	F084462	GAGG	MVSVPKEKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPATNLTAQQIADYVKKDYAKRKGIVGMQVEV
Ga0209012_10039837	F047176	GGA	VSAMATRIFRFYITLNTGQANNGAQGNPAPFTITAPSGINRRIVEIRPWGTQSFEYQGNYDTELYHDIDSNDINTYHRPHYVALDVNGTHQYSIVIFNNGSATGTFGVDVVVEESALATGGAAAPAAGGA
Ga0209012_10039838	F033508	AGG	LAAEAAQAPFVSSTTLRRVTGSSTTQLTIPARIGHRHVLYDVFVTTPPSLGYADVSVGTRIFIRLPFGVANIVSVSGPGAKITGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIKPEDISSHSVPGGSDAKVKPFIEVLDTLVTTTGNGINVLNENMPTGLGLLDNNGRVKATTQFTLLTAFADYINSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTGGDLFMDWTLRRYWKPDQPYVFKPNHQISVKADVPAVTGSGSTLRVALIGIRERLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209012_1003983

Overview

Ecosystem & Geography

Associated Families

Sequences