Scaffold Ga0209012

Basic Information
Taxon OID	3300025503 Open in IMG/M
Scaffold ID	Ga0209012_1002965 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209012_1002965 Open in IMG/M

Source Dataset Name

Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13560
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13560

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F023140	Metagenome / Metatranscriptome	211	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209012_10029651	F021133	N/A	MTKRDELIRQIYENGNYAIKKICEMEPDDKIANFSATDCIIGTANTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCKLHIGKPPKPYDFVVAQKHREILLKYSIYVWMGVMPLLGEKIALAKAICWRREDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIVELQKEYIVNIFKLK
Ga0209012_10029652	F023140	N/A	VFIGLVTVPIYILLKSFPFFVVFGAGILTTLSVLILFFYFLGAKFVGTWAILQKFAATLPTSFALSYLVKLLPTNPLLDYIILFVVGYSISTPLIFLTYYITMLLYDKKR
Ga0209012_10029653	F076262	AGGTGG	MSLNPVIKGSYTLAAPQSVSVAASSSSSVSISFTPLGAGELYVYIALPSGVTATVSIGGQSVSLSNGGNQFLIPANVPIGSITINNSNTSAVSVVVWALFIEVA
Ga0209012_10029654	F008949	AGGAGG	MSSQTVQLGTQTMTPKVQDLDNSYYIEFQVNITKYLNNSTNQTIDVKFICNKYKQVVVPSANPLSPPTVQTVQKTIQECVDEWYNQHKSVYEVA
Ga0209012_10029655	F011097	GGAGG	MIRDVPLYTSGGTDAFTGLSVGGSPITGNGSNYQVLRFHPNYARLLIYITGLSGTSPSIQFTINSPIGSNFYTLPPITSPQVVYIIGNENRTIITYLNTSGQVLQQVELPYNIFLNGVYVLWSVAGTSPSITAYIHFEFEDEEEDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209012_1002965

Overview

Ecosystem & Geography

Associated Families

Sequences