Scaffold Ga0208903_1004540

Overview

Basic Information

• Taxon OID: 3300025502
• Scaffold ID: Ga0208903_1004540
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5973
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006056	Metagenome	382	N
F009733	Metagenome	313	N
F017930	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208903_10045401	F009733	GGA	MSKIDQELHVDTAEVEPVKKKPTSSKHPKVATETERA
Ga0208903_10045402	F017930	GGAG	MIDIAFTLAHSHPDAEWTLDGDDYAGLTWLSDTPKPTEQEINAAYPLAVKAVADEEKARLKALSDARAFALSLGFTPAMLAVMYPQLEGA
Ga0208903_10045404	F006056	N/A	MTLQITLNGSVIDLGLFDYSLAIAHGRSDVTATPTASNTQIVLRGDTGPLLDLADTVAISFNGVDRFTGAISDLNVSFISTGTPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQTSTALDALGRIAQGTGATYYDDPTGRIIFEDYGNRGSTTFPGIWANQVGTWSEAEGTWADATLFPTSFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDESVTQTDSASITQYGRREYRLDTDIKTIDDATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTALLELVSGDLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLEVLQWGQVAPAFTWSEVGAGAQWFEIVTQSDLVRL