Scaffold Ga0209557_1021357

Overview

Basic Information

• Taxon OID: 3300025483
• Scaffold ID: Ga0209557_1021357
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2072
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010466	Metagenome / Metatranscriptome	303	N
F040112	Metagenome / Metatranscriptome	162	N
F063692	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_10213572	F010466	N/A	MRKLRFVVVFLLVQLNVFAQSAELEVGYDLAQEMLQWEELNPTHKAESDRYLKSMNYAFGLNGPDIEEVNHLLSDVDGVIPTMIEDSYDGRRKTWRATSVFVSLALYSEGEKRMFYLDLANHIARTDSDQTYAAVLLLEYVESIGSSGVEKRKSALLTYVQAYEEEIGIDFAERIYAYLGEK
Ga0209557_10213573	F063692	AGGAG	MKKLVAVVFVLITLVVMVLFSREKDKVQRLVNDRYKAACDFYFSGVVVDVANDFDVHRCMLRLELDTSTIANFDVRDTTAYYHAVIDGTDAEVIESIIYDHSTSGQANFIRPGMRYTFDGEVDSAYLFLADTLVESWPIQISTFGLMDVARFHQIPMAGGKTAVQRNKGWWPRLR
Ga0209557_10213574	F040112	AGG	MRKVDTCLIILVSFLLGSCVREPLLGEVLDIAEIQSEFEWVTLKSGKEEGFLEPLMKFEVYRTTEQSFKQIQDHLNRHLKRIEPGYYLNNEFNDFLRENGLRILNVNSSMINSNPFDNHYRVYFLSDSQTLAVFWINSN