Scaffold Ga0209557_1001434

Overview

Basic Information

• Taxon OID: 3300025483
• Scaffold ID: Ga0209557_1001434
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13182
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024091	Metagenome / Metatranscriptome	207	Y
F051050	Metagenome / Metatranscriptome	144	Y
F101061	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_100143411	F101061	N/A	MNDSVDFEDVLEDDDWGLIIDNNGNLKGMFIPEGYDEEEVPTAIIEICIKYFGIDPTEEVTFH
Ga0209557_100143412	F024091	N/A	MDEIQALMESHPRAHLEEGSNIHALMASAGLYFQHMDDENRDYYQFVSTAIEDELEWNV
Ga0209557_100143431	F051050	AGGA	LDKNSKIERQVHRWDLYAKAAPTIFLVTGGISLTIGITSFDTLFNIGMILFAFTAVTWWFWTIITVKYIIKTMSSATTNLIEVKQDLKDIRKTLEEERNE