Scaffold Ga0209557_1000969

Overview

Basic Information

• Taxon OID: 3300025483
• Scaffold ID: Ga0209557_1000969
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16355
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (93.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005350	Metagenome / Metatranscriptome	403	Y
F007687	Metagenome / Metatranscriptome	346	Y
F025716	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_100096914	F025716	GAGG	MDDKELERMINAAGLIGAVFGFVAGAGLMAMVGIIF
Ga0209557_100096916	F005350	AGGAG	MSNIIDCPECDGEGTVERDVWVRQSSTWHGDFESVIEDCDNCGGIGQIEALEEDE
Ga0209557_100096927	F007687	GGAG	MAKKAKPKSDKAKAAMANRGTFESKHTDYDKPIHYKVAAAVEPFTFASAAASKVWGDTLVNYVPPAYALRYRELKGELDAAMVADDYTLCAQLATSLIKALKVMNVKARQDGHEPPKVDGHIAEFKGKTYCFLASGDLAAVRRKYPTWAVYHISEVCAVMSVRTDEMVAAVTKEFAGARIIDVRAFDDEINFEPTGE