Scaffold Ga0209557

Basic Information
Taxon OID	3300025483 Open in IMG/M
Scaffold ID	Ga0209557_1000145 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209557_1000145 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44989
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (93.85%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

44989

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (93.85%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002542	Metagenome / Metatranscriptome	550	Y
F015117	Metagenome / Metatranscriptome	257	Y
F030747	Metagenome / Metatranscriptome	184	N
F066645	Metagenome / Metatranscriptome	126	N
F076624	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_100014516	F002542	AGGA	MHPTYLGWQVEWPVFIKRPLMADSKTWKQGDYFNWFERGIDADKVATLYFSGYIHHNKELEVQTKVGDRLSELAGKQLDTLVNLLNAEVKKRTSSTSEFETKKCKKSKLDDKQRGLIRRFLNSNSWVIEDFYNIRDKILND
Ga0209557_100014522	F030747	AGGA	MDLMNLKPSSDTVEVTLKHPNTGDTLKNDDKSDMTITIHASHSKEYKAATYEQTNKRLKAMQSGKKQEITAQDMEEAGLTLLSKATADWNITYGGEKPKLTVAKAKDLYNEVFWIKDQIEEALAESLDFTKA
Ga0209557_100014547	F066645	AGG	MKVSIKFECNSYDDGYDGETSSSREGVEDLYAMAQFLTDAVKGAGYTYVTDVGFEKDDGSMIFGEI
Ga0209557_100014549	F015117	AGGA	MAKFTMDMVLEYAKVFEENRDMGGDGNNAAKKAAKHNGQYVTNAYFTDEAQVQELLDGGMDPTPMGNDRVKQGNDFGIGKFIKLARMHDHVMTFTDKKGNPTDVDFGGAPKVVNLTNGVENKAWWTFSEDGTLGNGTKAKVQFETYSDGAGLRLIAIGVTDHVAWEDNSGPSEDDELFMV
Ga0209557_100014553	F076624	AGGA	MVDDDEYYSKLTKKASSGVVKYGWYDCVDGFKQADVDMGSAFHRKLDWMNKAADIYLSDNNKMAGFVGKFSEDCGISYDYGSQLNRIRKTFSDCTTKNFSHDTLKSLLSTPEELREEIVSSGKPVTVEEIKEAKEVHKEIQDVSEFKDIKQSYDDNDIDIFDVVEEVKARKASMPVVPPYNINEAMGAIKGIAQMYGQQYSGTTQDAAQVLLDKIMEEHDTDDIGLSIARDYAKWFLSLKSVIDLVGPELEDFLSDKPNLTVVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209557_1000145

Overview

Ecosystem & Geography

Associated Families

Sequences