NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208688_1086041

Scaffold Ga0208688_1086041


Overview

Basic Information
Taxon OID3300025480 Open in IMG/M
Scaffold IDGa0208688_1086041 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F028631Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0208688_10860411F000065N/ATPKLRKAPQPPLSHPEAIPDTDRAKRPPLSEPAATDQELIPGDRVEGLGNFGKPTGEFGTVKQANDEDAVVKWDDDGRVRVHQPSLKKV
Ga0208688_10860412F028631AGGAGGMRQKLVLWFLLMFTGFLIGFILQYSRLQRVQEDLSASTKQLGSCQSSQQLAQLRDTTTMMYLEVVQKNYGKAGEYSGEVFDQAQQI

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