NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208688_1037051

Scaffold Ga0208688_1037051


Overview

Basic Information
Taxon OID3300025480 Open in IMG/M
Scaffold IDGa0208688_1037051 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1124
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016049Metagenome / Metatranscriptome250Y
F016170Metagenome / Metatranscriptome249N

Sequences

Protein IDFamilyRBSSequence
Ga0208688_10370511F016170N/ASLRRLQQTLHLSYRRLQHLIGNGFLKARDSRVSVISLAEWCEKHRATLQPGVQDKIAADLWKEEKGHSWARVAKLVGVTAAEVGTWIANGDLKVVDPSVTDRAFEAFCRQHGAELNLQLMDPEVARWLIAEYGLKVGAPRVTSVPFSQKQALVVRICPKCKRDIRGNVYFRHVRSCRGAMSQRDSGRLGVNQQAS
Ga0208688_10370512F016049N/AYPSLKRWLSDAAGCDPFTHLTPEARKARASYRLVEPKRLTEAVTRYIDWEALAYWARPALEAGPPLVHKVARELGRRCAGFLEFNAKARKADHVDFPQDWHRLMLWITDHFFQDAKTGGWMDAILSSARSHPGAIRTMEYWEQCDEIWASNLPDPYPSFRSWRKQVDSYVVSMPDEKSQLAC

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.