NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208192_1033249

Scaffold Ga0208192_1033249


Overview

Basic Information
Taxon OID3300025477 Open in IMG/M
Scaffold IDGa0208192_1033249 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1117
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004503Metagenome / Metatranscriptome435Y
F023653Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0208192_10332491F023653N/AMKKGALTYSNGAYIENVAGVPEWQRLLCPCQPGNPYKFKLSETTRLQVFSNDESERTHFFREKDKAPTSSSSKAKEGSEQNKTTKGDYPE
Ga0208192_10332493F004503N/APATLEIEVEHNFAAAHLSIWVDDRLTYTHQLEGTDKKHLVVFHHVQGHEFHAMQVSPGKHSLRVQVTTDGANYDQSATVEGEFASGQENVLRINFDKHREMNLSLQ

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