Scaffold Ga0209508_1001476

Overview

Basic Information

• Taxon OID: 3300025471
• Scaffold ID: Ga0209508_1001476
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC129_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18270
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Canada
• Coordinates
  • Lat. (^o): 49.25
  • Long. (^o): -123.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088753	Metagenome / Metatranscriptome	109	N
F105008	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209508_10014766	F088753	AGGA	MGGYNNMTERGRILQELEMLKNTNDERLARRLSDWYGFVLSELTAGRVGDFIRSVPVDFVSLPFNGKRVENLINKCIKTLFEMAEDGRIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGHALPVVLHKETITEMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCLSSDYDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSWEELHMQIARAVAKIIEYEVATEFEKEKYAREDDDWVLEIR
Ga0209508_10014768	F105008	N/A	MTAIYDIAREEMMRNGDISLHMADGLFEAFSLIMQFKERVKFLPWYLLVLQETRKGRTGNFTTTVPFVWKKGDVFSAVRDILETLPQRCRTEEIYGPVPAMFAPGCAVRDGYAHLSRAGMFDLLFPSHDILFEIPCETGGTFRGLMCHSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRENRDVFAELLRIDEEMLKIAMLERGTEISGIFSKIFPDCDWLETCDAGTVLNLDGRRYLVGKTPEEALTQGFLSCIRSVRDRLSDDGYLDIIR