Scaffold Ga0208389_1011735

Overview

Basic Information

• Taxon OID: 3300025470
• Scaffold ID: Ga0208389_1011735
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2188
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023037	Metagenome / Metatranscriptome	211	N
F023279	Metagenome / Metatranscriptome	210	N
F035195	Metagenome / Metatranscriptome	172	N
F093238	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208389_10117354	F023279	GAG	MADSSKENTEAIVDTIKSELAIGFKNCIDKIDTEKKVVDRYNWEIYVKINKILHNSRRLDPQWTIEGDIGNSWSLNSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRTSNPGWSTNKTRRSSPILLTPTQIGLQEENTSQTN
Ga0208389_10117355	F035195	AGAAG	MEYRTLKTEAEVIELVQNSLNNVETEKSFEDNYEVMLKLFYAIKRLKNIRPKGTFRAVGVSFKQVSTPQK
Ga0208389_10117356	F023037	N/A	MNESQYNPNRLTTPAAVKLELISEIQASLNAIDGEESFRYNIQKVMRLYHAIEKLKQIEPYWLFEVRVISAAGTLV
Ga0208389_10117357	F093238	N/A	DISKTSGIKRELLIIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF