NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208389_1008838

Scaffold Ga0208389_1008838


Overview

Basic Information
Taxon OID3300025470 Open in IMG/M
Scaffold IDGa0208389_1008838 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2695
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011059Metagenome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0208389_10088383F011059N/AMVRKREKMSKMTYDQWEARYLEEEGSNYSQEKRLAFVNDYLLDPNLAAVCRKHEVPYQTAFQWKTKSWWHNMVEEILLNYKDELLAKQRQIINKTYDEIGERLENGDESYIPNEGHVRTKVKANHLATIADVTLKANQLLQGKATSINHVTIESLADKLRTITQEAIDITSESQTIQQIEQTHQDSE

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