Scaffold Ga0208389_1007239

Overview

Basic Information

• Taxon OID: 3300025470
• Scaffold ID: Ga0208389_1007239
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3117
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015440	Metagenome / Metatranscriptome	254	N
F016361	Metagenome / Metatranscriptome	247	Y
F017436	Metagenome / Metatranscriptome	240	N
F080871	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208389_10072391	F080871	N/A	MSNPQKRFSCSRSTIGFNQPEGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCKIIETIREIDPDYHLVVAPRSEDCLRIMHYDCLCNHSHGCKCA
Ga0208389_10072392	F016361	N/A	MCKKRELTKEPLIDGVNRPIGERSIQTLMSKQLALMALMDTMTITMDPEKGKKVFQEIVSIMKELKNMEARCTC
Ga0208389_10072396	F015440	N/A	MEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAESLTLPLIRNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSSMRSEQWTQEMLKTHIFIVIQQEMDNILKVLNPRITEPLDKNQESTIRQEWTKVLSL
Ga0208389_10072397	F017436	N/A	FTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKELKDMYYFMDRLKATTFDEWKNFLITGSTEFFDNRF