Basic Information | |
---|---|
Taxon OID | 3300025470 Open in IMG/M |
Scaffold ID | Ga0208389_1003509 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5155 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F036545 | Metagenome / Metatranscriptome | 169 | N |
F051885 | Metagenome / Metatranscriptome | 143 | N |
F070906 | Metagenome / Metatranscriptome | 122 | N |
F078638 | Metagenome / Metatranscriptome | 116 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208389_10035092 | F036545 | N/A | MDVFKNIPVRVPAYSYKMSNTTDETLKHFLKNERKERLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSEFNLEQFKKLQERMTFFKHLHPNWRLGPREVAEYSNCTCELCYQVRHPMKKDDLEEIKSLTIS |
Ga0208389_10035093 | F078638 | AGG | MKKFFRMSSKTESEKLGGMTVPKRSHDPAIIQKKFELIAKLLTLVNSLPPGTEAPNYLIMRKIFSIKKEIHDLDLMWRLTDEFYFQEYGVLSSIDLINTRKPWNAAVNTIRYMDLQRDLMTMREKFPEWEFTLSDVRKHSTCKCSECQKQKLLTAKEEPLSKDELSSSSSSSIEGPD |
Ga0208389_10035094 | F051885 | N/A | MSNSSKVEAPNTSSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVKDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKRNSNSEVQSKVRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVTSDMKHLSLCPK |
Ga0208389_10035095 | F070906 | N/A | MMENIERPLVNGSNEPNSDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWDEECLRLRYINCTCLDEGTPV |
⦗Top⦘ |