NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208389_1003509

Scaffold Ga0208389_1003509


Overview

Basic Information
Taxon OID3300025470 Open in IMG/M
Scaffold IDGa0208389_1003509 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5155
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036545Metagenome / Metatranscriptome169N
F051885Metagenome / Metatranscriptome143N
F070906Metagenome / Metatranscriptome122N
F078638Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208389_10035092F036545N/AMDVFKNIPVRVPAYSYKMSNTTDETLKHFLKNERKERLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSEFNLEQFKKLQERMTFFKHLHPNWRLGPREVAEYSNCTCELCYQVRHPMKKDDLEEIKSLTIS
Ga0208389_10035093F078638AGGMKKFFRMSSKTESEKLGGMTVPKRSHDPAIIQKKFELIAKLLTLVNSLPPGTEAPNYLIMRKIFSIKKEIHDLDLMWRLTDEFYFQEYGVLSSIDLINTRKPWNAAVNTIRYMDLQRDLMTMREKFPEWEFTLSDVRKHSTCKCSECQKQKLLTAKEEPLSKDELSSSSSSSIEGPD
Ga0208389_10035094F051885N/AMSNSSKVEAPNTSSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVKDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKRNSNSEVQSKVRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVTSDMKHLSLCPK
Ga0208389_10035095F070906N/AMMENIERPLVNGSNEPNSDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWDEECLRLRYINCTCLDEGTPV

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