Scaffold Ga0208497

Basic Information
Taxon OID	3300025466 Open in IMG/M
Scaffold ID	Ga0208497_1000111 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025466 Open in IMG/M

Scaffold ID

Ga0208497_1000111 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43759
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (78.69%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

43759

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (78.69%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005200	Metagenome	408	Y
F009735	Metagenome / Metatranscriptome	313	Y
F017814	Metagenome / Metatranscriptome	238	Y
F042732	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208497_100011119	F017814	GAG	MKIPSLYQQNKELVMSQQNTFDFNGFNELTERKPAGLQIFLAQQLLSNALWTMENYDNPRQVEVRDALNALKALRVQLKADALARA
Ga0208497_100011130	F009735	N/A	MMTGVVEATSTKEVNTKFGAKPTYSMKVNGNWVKCGFKDPGVQAGYEVEFDGVTGTYGMETKSVSILKKTATPVPPTLTTEGKVGVLGPSKHSYSGYKEKVFPIPPLHGDRAIVRQNALARATDLYIAARGGKSFELESSTLDLVIALARKFESYTAGDIDMAEAMKEDSEENIAAQE
Ga0208497_100011146	F005200	AGTAGG	MIEVLAVISACKAAHAGIRECVELYQDFKKDGKDVSDIVNDIGSHLGAFFTHQEAFKEAEKEAKKNPLPKNISINEEAMNRILRQQQLEQMETELREMIIYQVGMPGIWQKFTEMRETVRKEREKIEREQKKPLRWLLLKKGSSSINGRLGLHCQQVCLYCLQHLQLLCMVSI
Ga0208497_100011154	F042732	AGCAGG	MSSSTYTVSRDQIITLALGKLGVLEIGDTPDTNAIINASMTLNLLIKQMSTEGLKLWKISELNIPLINNQTNYILGGSTSTLMYDVLKPTVAITDKPLKVIQGFYRNIQVTPNIDTPVMLLSKQEYNVLGSKYSTGTANSIFYDVRNLNGILYVYLTPDLNAQTNLQLHIVAQMPLNDVATASDVPDFPNEWMNCLVWSLADELALQYGVPMNSRQEIAQRASGYKEKLMDWDVESYSTFFSPDFRSTSNNSYGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208497_1000111

Overview

Ecosystem & Geography

Associated Families

Sequences