Scaffold Ga0208193_1000871

Overview

Basic Information

• Taxon OID: 3300025463
• Scaffold ID: Ga0208193_1000871
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14186
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003775	Metagenome / Metatranscriptome	469	Y
F035647	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208193_10008717	F003775	AGGAG	MSSLDFDLDSRMNSLEQEWRQAYESSIVARADYQSLAAIPKSDSHLLDLARERVDRTEALKARIMAKIERLEDAMLGRD
Ga0208193_10008718	F035647	AGGAGG	MVSHYVDGDAAADLLQRRWFAVFKAASGVRAECEALLESIALTEAAWRQARVRLSELEALRDALGEELDLLDAGEEPLAAGRRKMVLSAA