Scaffold Ga0208193_1000274

Overview

Basic Information

• Taxon OID: 3300025463
• Scaffold ID: Ga0208193_1000274
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32212
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (89.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002897	Metagenome / Metatranscriptome	522	Y
F017679	Metagenome	239	Y
F027194	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208193_100027416	F017679	GGAG	MSMSTTSQPRRRRSRSDLVHLRSLPSAQPATKIGQVTWAWGEIEAGLAAGMKLKEVWEAARKDGIDTSYAQFRVYVSRLRCRQRSSIAPLPPPAVGNGASSHTDLPQPDPFSNLREQREKKKKDAGFEYDPFSINRDLTD
Ga0208193_100027417	F002897	GAG	MPRRTIRLTADIDERLQSTAKLKGYANPSAFLRAALDHELSGREDTIIGAEERLAASMEQMRREVFRLGRAQQALFAFVDSLAKVLLTCVPEPGGEAMDAAVARARGRHARLLKSAGQAMVGDSELALRDLVNNREGL
Ga0208193_10002746	F027194	AGGAG	MTIQITRPEVEALIETRLKSGKFRDAEDVILQALQSSETESPQPVAQRDEAIECLKTFGKVHGLSLGGMTIRELRDEARP